Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CHMP1AQ9HD42 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 NUDT16P1-203ENST00000513809 620 ntBASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 AC009102.3-201ENST00000623118 1491 ntBASIC15.4■□□□□ 0.06
CHMP1AQ9HD42 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.06
CHMP1AQ9HD42 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 PHGDH-209ENST00000641074 1780 ntBASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AP001412.1-201ENST00000608405 714 ntBASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AC036111.1-201ENST00000533973 1582 ntBASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CHMP1AQ9HD42 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms