Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 CYP51A1P2-201ENST00000419457 1499 ntBASIC29.29■■■□□ 2.28
IFT140Q96RY7 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
IFT140Q96RY7 AL592309.1-201ENST00000443127 649 ntBASIC29.29■■■□□ 2.28
IFT140Q96RY7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
IFT140Q96RY7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
IFT140Q96RY7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
IFT140Q96RY7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC29.28■■■□□ 2.28
IFT140Q96RY7 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC29.28■■■□□ 2.28
IFT140Q96RY7 AC109462.3-201ENST00000573934 613 ntBASIC29.28■■■□□ 2.28
IFT140Q96RY7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
IFT140Q96RY7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 DUTP2-201ENST00000519164 463 ntBASIC29.27■■■□□ 2.28
IFT140Q96RY7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28
IFT140Q96RY7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
IFT140Q96RY7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
IFT140Q96RY7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
IFT140Q96RY7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
IFT140Q96RY7 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
IFT140Q96RY7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 TMED1-207ENST00000591695 809 ntTSL 5 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC29.26■■■□□ 2.27
IFT140Q96RY7 PI4KAP1-204ENST00000612579 1703 ntBASIC29.26■■■□□ 2.27
IFT140Q96RY7 AL590787.1-201ENST00000568856 1315 ntBASIC29.25■■■□□ 2.27
IFT140Q96RY7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 SPDYE14P-201ENST00000442619 822 ntBASIC29.25■■■□□ 2.27
IFT140Q96RY7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 AL135744.1-201ENST00000565098 629 ntBASIC29.25■■■□□ 2.27
IFT140Q96RY7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 AL157384.1-201ENST00000445995 2473 ntBASIC29.25■■■□□ 2.27
IFT140Q96RY7 AL137060.1-201ENST00000618151 2648 ntBASIC29.25■■■□□ 2.27
IFT140Q96RY7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC29.25■■■□□ 2.27
IFT140Q96RY7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
IFT140Q96RY7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
IFT140Q96RY7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 ACTG1P4-201ENST00000425123 1122 ntBASIC29.24■■■□□ 2.27
IFT140Q96RY7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 AC243562.1-201ENST00000560672 389 ntBASIC29.24■■■□□ 2.27
IFT140Q96RY7 AC005082.1-201ENST00000413042 2259 ntBASIC29.24■■■□□ 2.27
IFT140Q96RY7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
IFT140Q96RY7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
IFT140Q96RY7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
IFT140Q96RY7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC29.24■■■□□ 2.27
IFT140Q96RY7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
IFT140Q96RY7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms