Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AL353593.2-201ENST00000602529 1483 ntBASIC18.09■□□□□ 0.49
CHFRQ96EP1 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AC023274.1-201ENST00000418278 595 ntBASIC18.09■□□□□ 0.49
CHFRQ96EP1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CHFRQ96EP1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHFRQ96EP1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.08■□□□□ 0.49
CHFRQ96EP1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.08■□□□□ 0.49
CHFRQ96EP1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.08■□□□□ 0.49
CHFRQ96EP1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHFRQ96EP1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CHFRQ96EP1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHFRQ96EP1 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CHFRQ96EP1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 AC006557.2-201ENST00000592985 1240 ntBASIC18.08■□□□□ 0.48
CHFRQ96EP1 AC064836.3-201ENST00000607928 673 ntBASIC18.08■□□□□ 0.48
CHFRQ96EP1 MIR1199-201ENST00000621445 119 ntBASIC18.08■□□□□ 0.48
CHFRQ96EP1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.08■□□□□ 0.48
CHFRQ96EP1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHFRQ96EP1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 RPS8P6-201ENST00000426177 609 ntBASIC18.07■□□□□ 0.48
CHFRQ96EP1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 AC005593.1-201ENST00000624894 515 ntBASIC18.07■□□□□ 0.48
CHFRQ96EP1 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHFRQ96EP1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.07■□□□□ 0.48
CHFRQ96EP1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.06■□□□□ 0.48
CHFRQ96EP1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHFRQ96EP1 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms