Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 KRT17P6-201ENST00000453795 1220 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 AC104819.1-201ENST00000504587 486 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 TPSP2-201ENST00000561760 610 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 AC005332.3-201ENST00000589904 676 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 MTMR9LP-203ENST00000426597 1545 ntBASIC18.32■□□□□ 0.52
SKA1Q96BD8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA1Q96BD8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.32■□□□□ 0.52
SKA1Q96BD8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 TOB2P1-201ENST00000469761 992 ntBASIC18.31■□□□□ 0.52
SKA1Q96BD8 VENTXP7-201ENST00000475503 772 ntBASIC18.31■□□□□ 0.52
SKA1Q96BD8 GUSBP12-201ENST00000513727 720 ntBASIC18.31■□□□□ 0.52
SKA1Q96BD8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 RNF126P1-202ENST00000569893 925 ntBASIC18.31■□□□□ 0.52
SKA1Q96BD8 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 Z69720.1-201ENST00000601483 472 ntBASIC18.31■□□□□ 0.52
SKA1Q96BD8 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SKA1Q96BD8 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SKA1Q96BD8 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 TSPY19P-201ENST00000418461 509 ntBASIC18.3■□□□□ 0.52
SKA1Q96BD8 TSPY18P-201ENST00000441642 509 ntBASIC18.3■□□□□ 0.52
SKA1Q96BD8 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 GPR32P1-201ENST00000601788 811 ntBASIC18.3■□□□□ 0.52
SKA1Q96BD8 IFNL4P1-201ENST00000607083 540 ntBASIC18.3■□□□□ 0.52
SKA1Q96BD8 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.3■□□□□ 0.52
SKA1Q96BD8 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SKA1Q96BD8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.3■□□□□ 0.52
SKA1Q96BD8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms