Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RN7SL589P-201ENST00000481268 310 ntBASIC17.94■□□□□ 0.46
TTC28Q96AY4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.94■□□□□ 0.46
TTC28Q96AY4 AC020907.1-201ENST00000616460 1350 ntBASIC17.94■□□□□ 0.46
TTC28Q96AY4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TTC28Q96AY4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 AL590560.3-201ENST00000623350 461 ntBASIC17.93■□□□□ 0.46
TTC28Q96AY4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.93■□□□□ 0.46
TTC28Q96AY4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 MYCLP1-201ENST00000372451 1075 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 CXCL1P1-201ENST00000502804 216 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 AL049757.1-201ENST00000616842 1596 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 UXT-AS1-201ENST00000590504 1525 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 DFFBP1-201ENST00000433250 979 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TTC28Q96AY4 AC026120.1-201ENST00000611536 926 ntBASIC17.92■□□□□ 0.46
TTC28Q96AY4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
TTC28Q96AY4 AL353593.2-201ENST00000602529 1483 ntBASIC17.91■□□□□ 0.46
TTC28Q96AY4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 SPDYE7P-202ENST00000420373 878 ntBASIC17.91■□□□□ 0.46
TTC28Q96AY4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 SNX29P1-201ENST00000548357 1007 ntBASIC17.91■□□□□ 0.46
TTC28Q96AY4 RHOQP1-201ENST00000555758 579 ntBASIC17.91■□□□□ 0.46
TTC28Q96AY4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.91■□□□□ 0.46
TTC28Q96AY4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TTC28Q96AY4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AC140912.1-201ENST00000577171 1054 ntBASIC17.9■□□□□ 0.46
TTC28Q96AY4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms