Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 ADH5P3-201ENST00000433842 1137 ntBASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SMC1BQ8NDV3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 AC103564.2-201ENST00000432853 1299 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 AL512638.1-201ENST00000457493 794 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 RN7SL692P-201ENST00000464677 288 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 AC069335.1-201ENST00000489972 472 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 MTMR9LP-203ENST00000426597 1545 ntBASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SMC1BQ8NDV3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 AC125807.1-201ENST00000483097 614 ntBASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 AL662799.1-202ENST00000614205 422 ntBASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 AL390754.1-201ENST00000619088 582 ntBASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SMC1BQ8NDV3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 FO538757.1-201ENST00000623083 1397 ntBASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 AIRN-201ENST00000601203 4374 ntBASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 KRT17P7-201ENST00000451704 1104 ntBASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 IGHV3-42-201ENST00000520410 361 ntBASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC21.02■□□□□ 0.96
SMC1BQ8NDV3 SPDYE22P-201ENST00000582158 798 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms