Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DNAJB3-201ENST00000446806 729 ntBASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 AC019129.2-201ENST00000609837 1235 ntBASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 AC093677.2-201ENST00000600169 1863 ntBASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 AC022898.2-201ENST00000616822 1312 ntBASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 AC018845.2-201ENST00000568326 409 ntBASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 AC092865.6-201ENST00000642101 219 ntBASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USHBP1Q8N6Y0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 AL589182.2-201ENST00000619332 1049 ntBASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.4■■□□□ 1.34
USHBP1Q8N6Y0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 FUT8-AS1-201ENST00000621019 1521 ntBASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.39■■□□□ 1.34
USHBP1Q8N6Y0 AC009949.1-201ENST00000623048 1830 ntBASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 PMS2P2-201ENST00000425039 1128 ntBASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 AC108073.2-201ENST00000464002 357 ntBASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 ALG1L5P-201ENST00000482043 771 ntBASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC23.39■■□□□ 1.33
USHBP1Q8N6Y0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC23.38■■□□□ 1.33
USHBP1Q8N6Y0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms