Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 AC106028.4-201ENST00000614509 607 ntBASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC44A3Q8N4M1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC44A3Q8N4M1 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 NCF1C-201ENST00000438382 1427 ntBASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 AL353593.2-201ENST00000602529 1483 ntBASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC44A3Q8N4M1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 SIRPAP1-201ENST00000448467 1770 ntBASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AL031432.2-201ENST00000566714 459 ntBASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AL928711.1-201ENST00000570165 459 ntBASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.17■□□□□ 0.5
SLC44A3Q8N4M1 AC132938.5-201ENST00000624980 1813 ntBASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 AC138932.1-201ENST00000534164 6830 ntBASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 AC011467.4-201ENST00000594891 528 ntBASIC18.16■□□□□ 0.5
SLC44A3Q8N4M1 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms