Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SYNE3Q6ZMZ3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 AC067852.2-201ENST00000590513 2313 ntBASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 AC090616.6-201ENST00000582640 721 ntBASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 AP000550.4-202ENST00000639755 178 ntBASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SYNE3Q6ZMZ3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AC116407.2-201ENST00000613639 860 ntBASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SYNE3Q6ZMZ3 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.02■□□□□ 0.95
SYNE3Q6ZMZ3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
SYNE3Q6ZMZ3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.02■□□□□ 0.95
SYNE3Q6ZMZ3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.02■□□□□ 0.95
SYNE3Q6ZMZ3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 MTCL1P1-201ENST00000446207 792 ntBASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AC068472.1-201ENST00000474589 881 ntBASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AC112698.1-201ENST00000510299 916 ntBASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AC091076.1-201ENST00000610741 619 ntBASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 AL358472.4-201ENST00000633140 710 ntBASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SYNE3Q6ZMZ3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms