Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.28■□□□□ 0.68
KRT39Q6A163 CHCHD2P8-201ENST00000429873 447 ntBASIC19.28■□□□□ 0.68
KRT39Q6A163 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.28■□□□□ 0.68
KRT39Q6A163 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.28■□□□□ 0.68
KRT39Q6A163 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.28■□□□□ 0.68
KRT39Q6A163 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 AL353801.3-201ENST00000609898 542 ntBASIC19.28■□□□□ 0.68
KRT39Q6A163 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
KRT39Q6A163 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
KRT39Q6A163 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.27■□□□□ 0.68
KRT39Q6A163 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.27■□□□□ 0.68
KRT39Q6A163 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
KRT39Q6A163 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.27■□□□□ 0.68
KRT39Q6A163 AL358472.4-201ENST00000633140 710 ntBASIC19.27■□□□□ 0.68
KRT39Q6A163 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
KRT39Q6A163 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
KRT39Q6A163 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
KRT39Q6A163 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.27■□□□□ 0.68
KRT39Q6A163 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
KRT39Q6A163 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
KRT39Q6A163 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
KRT39Q6A163 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.27■□□□□ 0.67
KRT39Q6A163 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
KRT39Q6A163 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
KRT39Q6A163 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
KRT39Q6A163 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.26■□□□□ 0.67
KRT39Q6A163 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.26■□□□□ 0.67
KRT39Q6A163 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
KRT39Q6A163 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
KRT39Q6A163 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.26■□□□□ 0.67
KRT39Q6A163 TSSC2-201ENST00000450217 709 ntBASIC19.26■□□□□ 0.67
KRT39Q6A163 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.26■□□□□ 0.67
KRT39Q6A163 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.26■□□□□ 0.67
KRT39Q6A163 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.26■□□□□ 0.67
KRT39Q6A163 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
KRT39Q6A163 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
KRT39Q6A163 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
KRT39Q6A163 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.25■□□□□ 0.67
KRT39Q6A163 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 LINC00896-202ENST00000609602 2128 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.25■□□□□ 0.67
KRT39Q6A163 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.25■□□□□ 0.67
KRT39Q6A163 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
KRT39Q6A163 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.25■□□□□ 0.67
KRT39Q6A163 AC096633.1-201ENST00000422446 749 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 AL845331.1-201ENST00000424978 1190 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 AC011840.4-201ENST00000578471 627 ntBASIC19.25■□□□□ 0.67
KRT39Q6A163 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.25■□□□□ 0.67
KRT39Q6A163 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
KRT39Q6A163 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.25■□□□□ 0.67
KRT39Q6A163 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms