Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 TBC1D3P5-201ENST00000579401 1545 ntBASIC12.67□□□□□ -0.38
COL7A1Q02388 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.67□□□□□ -0.38
COL7A1Q02388 ARSEP1-201ENST00000420443 635 ntBASIC12.67□□□□□ -0.38
COL7A1Q02388 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.67□□□□□ -0.38
COL7A1Q02388 AC074386.1-202ENST00000463561 864 ntBASIC12.67□□□□□ -0.38
COL7A1Q02388 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.67□□□□□ -0.38
COL7A1Q02388 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.67□□□□□ -0.38
COL7A1Q02388 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL7A1Q02388 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.66□□□□□ -0.38
COL7A1Q02388 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.66□□□□□ -0.38
COL7A1Q02388 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.66□□□□□ -0.38
COL7A1Q02388 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
COL7A1Q02388 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.66□□□□□ -0.38
COL7A1Q02388 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 MIR943-201ENST00000401286 94 ntBASIC12.66□□□□□ -0.38
COL7A1Q02388 CNN2P2-201ENST00000443536 909 ntBASIC12.66□□□□□ -0.38
COL7A1Q02388 CNN2P3-201ENST00000450201 906 ntBASIC12.66□□□□□ -0.38
COL7A1Q02388 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC12.66□□□□□ -0.38
COL7A1Q02388 AL136317.3-201ENST00000618497 906 ntBASIC12.66□□□□□ -0.38
COL7A1Q02388 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL7A1Q02388 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
COL7A1Q02388 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.66□□□□□ -0.38
COL7A1Q02388 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL7A1Q02388 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.65□□□□□ -0.38
COL7A1Q02388 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.65□□□□□ -0.38
COL7A1Q02388 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.65□□□□□ -0.38
COL7A1Q02388 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC12.65□□□□□ -0.38
COL7A1Q02388 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.65□□□□□ -0.38
COL7A1Q02388 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC12.65□□□□□ -0.38
COL7A1Q02388 AC096734.2-201ENST00000562054 433 ntBASIC12.65□□□□□ -0.38
COL7A1Q02388 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.65□□□□□ -0.38
COL7A1Q02388 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms