Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 AC087499.1-201ENST00000418141 1075 ntBASIC17.29■□□□□ 0.36
FOXA1P55317 RASA4DP-201ENST00000460726 1199 ntBASIC17.29■□□□□ 0.36
FOXA1P55317 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.29■□□□□ 0.36
FOXA1P55317 AC024563.2-201ENST00000603282 481 ntBASIC17.29■□□□□ 0.36
FOXA1P55317 AC145285.6-201ENST00000604632 637 ntBASIC17.29■□□□□ 0.36
FOXA1P55317 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
FOXA1P55317 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA1P55317 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
FOXA1P55317 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXA1P55317 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 AL391807.1-203ENST00000604392 2365 ntBASIC17.28■□□□□ 0.36
FOXA1P55317 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
FOXA1P55317 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXA1P55317 AC093827.2-201ENST00000512654 315 ntBASIC17.28■□□□□ 0.36
FOXA1P55317 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 AC010203.1-204ENST00000548782 407 ntBASIC17.28■□□□□ 0.36
FOXA1P55317 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXA1P55317 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXA1P55317 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
FOXA1P55317 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.28■□□□□ 0.36
FOXA1P55317 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA1P55317 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
FOXA1P55317 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
FOXA1P55317 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXA1P55317 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXA1P55317 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXA1P55317 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXA1P55317 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.27■□□□□ 0.36
FOXA1P55317 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
FOXA1P55317 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXA1P55317 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.27■□□□□ 0.36
FOXA1P55317 KRT18P65-201ENST00000439811 1286 ntBASIC17.27■□□□□ 0.36
FOXA1P55317 SLC25A3P1-201ENST00000443844 931 ntBASIC17.27■□□□□ 0.36
FOXA1P55317 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
FOXA1P55317 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.27■□□□□ 0.36
FOXA1P55317 AL441883.1-201ENST00000566170 1045 ntBASIC17.27■□□□□ 0.36
FOXA1P55317 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA1P55317 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 HCG11-201ENST00000411553 5696 ntBASIC17.27■□□□□ 0.35
FOXA1P55317 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
FOXA1P55317 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
FOXA1P55317 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.26■□□□□ 0.35
FOXA1P55317 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
FOXA1P55317 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
FOXA1P55317 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
FOXA1P55317 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms