Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC006504.4-201ENST00000592118 1568 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
COL4A4P53420 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A4P53420 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A4P53420 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.95■□□□□ 0.62
COL4A4P53420 AC005498.2-205ENST00000593218 784 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.95■□□□□ 0.62
COL4A4P53420 AD001527.2-201ENST00000622994 785 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A4P53420 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 AC004817.3-201ENST00000602957 2129 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.95■□□□□ 0.62
COL4A4P53420 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A4P53420 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL4A4P53420 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.95■□□□□ 0.62
COL4A4P53420 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 AL139400.1-201ENST00000366220 510 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 IGLL3P-201ENST00000412472 434 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 ADH5P3-201ENST00000433842 1137 ntBASIC18.95■□□□□ 0.62
COL4A4P53420 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.95■□□□□ 0.62
COL4A4P53420 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL4A4P53420 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 AL354751.1-201ENST00000412768 1863 ntBASIC18.94■□□□□ 0.62
COL4A4P53420 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A4P53420 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL4A4P53420 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL4A4P53420 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.94■□□□□ 0.62
COL4A4P53420 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 CEND1P1-201ENST00000451006 455 ntBASIC18.94■□□□□ 0.62
COL4A4P53420 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.94■□□□□ 0.62
COL4A4P53420 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 AL031432.2-201ENST00000566714 459 ntBASIC18.94■□□□□ 0.62
COL4A4P53420 AL928711.1-201ENST00000570165 459 ntBASIC18.94■□□□□ 0.62
COL4A4P53420 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
COL4A4P53420 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL4A4P53420 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL4A4P53420 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.93■□□□□ 0.62
COL4A4P53420 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.93■□□□□ 0.62
COL4A4P53420 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.93■□□□□ 0.62
COL4A4P53420 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL4A4P53420 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A4P53420 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL4A4P53420 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A4P53420 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
COL4A4P53420 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL4A4P53420 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 SPDYE21P-201ENST00000413323 827 ntBASIC18.92■□□□□ 0.62
COL4A4P53420 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.92■□□□□ 0.62
COL4A4P53420 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.92■□□□□ 0.62
COL4A4P53420 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL4A4P53420 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.92■□□□□ 0.62
COL4A4P53420 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.92■□□□□ 0.62
COL4A4P53420 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.92■□□□□ 0.62
COL4A4P53420 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL4A4P53420 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms