Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NEK3P51956 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NEK3P51956 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NEK3P51956 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.41■□□□□ 0.54
NEK3P51956 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NEK3P51956 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NEK3P51956 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.4■□□□□ 0.54
NEK3P51956 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.4■□□□□ 0.54
NEK3P51956 AP002383.4-201ENST00000442518 975 ntBASIC18.4■□□□□ 0.54
NEK3P51956 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.4■□□□□ 0.54
NEK3P51956 AP002414.4-201ENST00000589764 1148 ntBASIC18.4■□□□□ 0.54
NEK3P51956 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.4■□□□□ 0.54
NEK3P51956 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NEK3P51956 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.4■□□□□ 0.54
NEK3P51956 AC012317.2-201ENST00000623305 2251 ntBASIC18.4■□□□□ 0.54
NEK3P51956 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NEK3P51956 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.4■□□□□ 0.54
NEK3P51956 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NEK3P51956 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEK3P51956 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NEK3P51956 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NEK3P51956 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NEK3P51956 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NEK3P51956 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.39■□□□□ 0.54
NEK3P51956 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
NEK3P51956 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.39■□□□□ 0.53
NEK3P51956 AL096828.2-201ENST00000567259 1965 ntBASIC18.39■□□□□ 0.53
NEK3P51956 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
NEK3P51956 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.39■□□□□ 0.53
NEK3P51956 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.39■□□□□ 0.53
NEK3P51956 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
NEK3P51956 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.39■□□□□ 0.53
NEK3P51956 AC008687.5-201ENST00000593746 558 ntBASIC18.39■□□□□ 0.53
NEK3P51956 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.39■□□□□ 0.53
NEK3P51956 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.39■□□□□ 0.53
NEK3P51956 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 KRT18P1-202ENST00000452408 1331 ntBASIC18.39■□□□□ 0.53
NEK3P51956 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.39■□□□□ 0.53
NEK3P51956 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.39■□□□□ 0.53
NEK3P51956 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEK3P51956 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.39■□□□□ 0.53
NEK3P51956 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.39■□□□□ 0.53
NEK3P51956 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.38■□□□□ 0.53
NEK3P51956 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 TNRC18P3-201ENST00000441896 2691 ntBASIC18.38■□□□□ 0.53
NEK3P51956 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.38■□□□□ 0.53
NEK3P51956 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NEK3P51956 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.38■□□□□ 0.53
NEK3P51956 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.38■□□□□ 0.53
NEK3P51956 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.38■□□□□ 0.53
NEK3P51956 MIR3180-1-201ENST00000580374 94 ntBASIC18.38■□□□□ 0.53
NEK3P51956 MIR3180-3-201ENST00000584616 94 ntBASIC18.38■□□□□ 0.53
NEK3P51956 CLEC4GP1-201ENST00000596555 870 ntBASIC18.38■□□□□ 0.53
NEK3P51956 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NEK3P51956 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms