Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.81■□□□□ 0.28
RFX3P48380 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 AC022616.7-201ENST00000525383 220 ntBASIC16.81■□□□□ 0.28
RFX3P48380 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.81■□□□□ 0.28
RFX3P48380 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.81■□□□□ 0.28
RFX3P48380 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.81■□□□□ 0.28
RFX3P48380 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 AC138028.4-201ENST00000564984 1845 ntBASIC16.81■□□□□ 0.28
RFX3P48380 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RFX3P48380 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RFX3P48380 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RFX3P48380 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.8■□□□□ 0.28
RFX3P48380 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.8■□□□□ 0.28
RFX3P48380 AC063952.2-201ENST00000498792 1227 ntBASIC16.8■□□□□ 0.28
RFX3P48380 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.8■□□□□ 0.28
RFX3P48380 AL049597.2-201ENST00000565575 961 ntBASIC16.8■□□□□ 0.28
RFX3P48380 LINC01238-205ENST00000567549 1107 ntBASIC16.8■□□□□ 0.28
RFX3P48380 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
RFX3P48380 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 LINC00602-201ENST00000629776 2065 ntBASIC16.8■□□□□ 0.28
RFX3P48380 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RFX3P48380 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.8■□□□□ 0.28
RFX3P48380 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 LINC01311-201ENST00000565162 1445 ntBASIC16.79■□□□□ 0.28
RFX3P48380 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX3P48380 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RFX3P48380 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX3P48380 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RFX3P48380 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RFX3P48380 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RFX3P48380 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.79■□□□□ 0.28
RFX3P48380 ZNF444P1-201ENST00000559497 298 ntBASIC16.79■□□□□ 0.28
RFX3P48380 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.79■□□□□ 0.28
RFX3P48380 AC024563.2-201ENST00000603282 481 ntBASIC16.79■□□□□ 0.28
RFX3P48380 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX3P48380 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX3P48380 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 KRT18P48-201ENST00000434763 852 ntBASIC16.78■□□□□ 0.28
RFX3P48380 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX3P48380 FAM210CP-201ENST00000445714 574 ntBASIC16.78■□□□□ 0.28
RFX3P48380 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.78■□□□□ 0.28
RFX3P48380 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX3P48380 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX3P48380 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RFX3P48380 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms