Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
NKX2-1P43699 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-1P43699 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.64□□□□□ -0.07
NKX2-1P43699 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NKX2-1P43699 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.64□□□□□ -0.07
NKX2-1P43699 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX2-1P43699 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.64□□□□□ -0.07
NKX2-1P43699 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NKX2-1P43699 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 LINC01126-201ENST00000623515 1646 ntBASIC14.63□□□□□ -0.07
NKX2-1P43699 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-1P43699 AC026271.3-201ENST00000571884 352 ntBASIC14.63□□□□□ -0.07
NKX2-1P43699 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.63□□□□□ -0.07
NKX2-1P43699 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.63□□□□□ -0.07
NKX2-1P43699 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
NKX2-1P43699 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NKX2-1P43699 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC14.63□□□□□ -0.07
NKX2-1P43699 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
NKX2-1P43699 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
NKX2-1P43699 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 RPS2P4-201ENST00000476944 856 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 DUTP2-201ENST00000519164 463 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.62□□□□□ -0.07
NKX2-1P43699 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.62□□□□□ -0.07
NKX2-1P43699 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 AC008403.3-201ENST00000598924 454 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 AL353708.3-201ENST00000610272 989 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
NKX2-1P43699 AL031985.4-201ENST00000642138 673 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
NKX2-1P43699 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.62□□□□□ -0.07
NKX2-1P43699 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NKX2-1P43699 UBALD1-205ENST00000590891 2641 ntBASIC14.62□□□□□ -0.07
NKX2-1P43699 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms