Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC107890.1-201ENST00000422478 521 ntBASIC21.54■■□□□ 1.04
BRCA1P38398 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.54■■□□□ 1.04
BRCA1P38398 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.54■■□□□ 1.04
BRCA1P38398 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.54■■□□□ 1.04
BRCA1P38398 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
BRCA1P38398 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
BRCA1P38398 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.54■■□□□ 1.04
BRCA1P38398 FAM58DP-201ENST00000428076 619 ntBASIC21.54■■□□□ 1.04
BRCA1P38398 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC21.54■■□□□ 1.04
BRCA1P38398 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.54■■□□□ 1.04
BRCA1P38398 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.54■■□□□ 1.04
BRCA1P38398 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
BRCA1P38398 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.53■■□□□ 1.04
BRCA1P38398 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 MRPS18AP1-201ENST00000414458 589 ntBASIC21.53■■□□□ 1.04
BRCA1P38398 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.53■■□□□ 1.04
BRCA1P38398 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.53■■□□□ 1.04
BRCA1P38398 SPDYE22P-201ENST00000582158 798 ntBASIC21.53■■□□□ 1.04
BRCA1P38398 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.53■■□□□ 1.04
BRCA1P38398 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
BRCA1P38398 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
BRCA1P38398 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.53■■□□□ 1.04
BRCA1P38398 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
BRCA1P38398 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.52■■□□□ 1.04
BRCA1P38398 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.52■■□□□ 1.04
BRCA1P38398 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.52■■□□□ 1.04
BRCA1P38398 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.52■■□□□ 1.04
BRCA1P38398 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.52■■□□□ 1.04
BRCA1P38398 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
BRCA1P38398 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BRCA1P38398 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
BRCA1P38398 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
BRCA1P38398 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.52■■□□□ 1.03
BRCA1P38398 AC092580.3-201ENST00000430932 139 ntBASIC21.52■■□□□ 1.03
BRCA1P38398 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.52■■□□□ 1.03
BRCA1P38398 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC21.52■■□□□ 1.03
BRCA1P38398 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.52■■□□□ 1.03
BRCA1P38398 AC025048.6-201ENST00000634326 1161 ntBASIC21.52■■□□□ 1.03
BRCA1P38398 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
BRCA1P38398 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 AC097637.2-201ENST00000624096 1997 ntBASIC21.51■■□□□ 1.03
BRCA1P38398 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 AC093484.2-201ENST00000580996 2166 ntBASIC21.51■■□□□ 1.03
BRCA1P38398 COX5BP8-201ENST00000416911 349 ntBASIC21.51■■□□□ 1.03
BRCA1P38398 TREML5P-201ENST00000421694 576 ntBASIC21.51■■□□□ 1.03
BRCA1P38398 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.51■■□□□ 1.03
BRCA1P38398 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.51■■□□□ 1.03
BRCA1P38398 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BRCA1P38398 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.5■■□□□ 1.03
BRCA1P38398 RN7SL692P-201ENST00000464677 288 ntBASIC21.5■■□□□ 1.03
BRCA1P38398 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.5■■□□□ 1.03
BRCA1P38398 STK25P1-201ENST00000585406 838 ntBASIC21.5■■□□□ 1.03
BRCA1P38398 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.5■■□□□ 1.03
BRCA1P38398 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.5■■□□□ 1.03
BRCA1P38398 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BRCA1P38398 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.5■■□□□ 1.03
BRCA1P38398 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.49■■□□□ 1.03
BRCA1P38398 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms