Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.32■□□□□ 0.52
VCANP13611 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
VCANP13611 ELK2AP-201ENST00000392510 1007 ntBASIC18.32■□□□□ 0.52
VCANP13611 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.32■□□□□ 0.52
VCANP13611 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VCANP13611 AC068137.2-201ENST00000605408 478 ntBASIC18.32■□□□□ 0.52
VCANP13611 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.32■□□□□ 0.52
VCANP13611 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCANP13611 AL133338.1-201ENST00000565695 1517 ntBASIC18.32■□□□□ 0.52
VCANP13611 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.32■□□□□ 0.52
VCANP13611 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.31■□□□□ 0.52
VCANP13611 AC119751.2-201ENST00000504529 210 ntBASIC18.31■□□□□ 0.52
VCANP13611 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.31■□□□□ 0.52
VCANP13611 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.31■□□□□ 0.52
VCANP13611 AP001059.3-201ENST00000619053 235 ntBASIC18.31■□□□□ 0.52
VCANP13611 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VCANP13611 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.31■□□□□ 0.52
VCANP13611 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.31■□□□□ 0.52
VCANP13611 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VCANP13611 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 AC092580.3-201ENST00000430932 139 ntBASIC18.31■□□□□ 0.52
VCANP13611 AC140878.1-201ENST00000565277 250 ntBASIC18.31■□□□□ 0.52
VCANP13611 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 AC138969.3-201ENST00000546612 1459 ntBASIC18.31■□□□□ 0.52
VCANP13611 AC138932.2-201ENST00000548268 1459 ntBASIC18.31■□□□□ 0.52
VCANP13611 AC126755.4-201ENST00000549796 1459 ntBASIC18.31■□□□□ 0.52
VCANP13611 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.31■□□□□ 0.52
VCANP13611 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 FAM86MP-201ENST00000340703 885 ntBASIC18.31■□□□□ 0.52
VCANP13611 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 AC092933.1-201ENST00000393644 945 ntBASIC18.31■□□□□ 0.52
VCANP13611 AL512384.1-201ENST00000406683 331 ntBASIC18.31■□□□□ 0.52
VCANP13611 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VCANP13611 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.31■□□□□ 0.52
VCANP13611 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.31■□□□□ 0.52
VCANP13611 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.31■□□□□ 0.52
VCANP13611 AD001527.2-201ENST00000622994 785 ntBASIC18.31■□□□□ 0.52
VCANP13611 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
VCANP13611 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCANP13611 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VCANP13611 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
VCANP13611 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.3■□□□□ 0.52
VCANP13611 IRX1P1-201ENST00000438849 1838 ntBASIC18.3■□□□□ 0.52
VCANP13611 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VCANP13611 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.3■□□□□ 0.52
VCANP13611 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VCANP13611 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.3■□□□□ 0.52
VCANP13611 AC010460.3-201ENST00000511359 1579 ntBASIC18.3■□□□□ 0.52
VCANP13611 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 MTCL1P1-201ENST00000446207 792 ntBASIC18.3■□□□□ 0.52
VCANP13611 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.3■□□□□ 0.52
VCANP13611 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.3■□□□□ 0.52
VCANP13611 AC068587.9-201ENST00000641814 219 ntBASIC18.3■□□□□ 0.52
VCANP13611 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCANP13611 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VCANP13611 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.29■□□□□ 0.52
VCANP13611 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.29■□□□□ 0.52
VCANP13611 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.29■□□□□ 0.52
VCANP13611 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
VCANP13611 AC023141.13-201ENST00000604991 943 ntBASIC18.29■□□□□ 0.52
VCANP13611 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms