Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 AC026396.1-201ENST00000419388 421 ntBASIC21.28■■□□□ 1
MBD4O95243 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.28■■□□□ 1
MBD4O95243 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.28■■□□□ 1
MBD4O95243 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
MBD4O95243 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.28■■□□□ 1
MBD4O95243 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.28■■□□□ 1
MBD4O95243 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MBD4O95243 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.27■■□□□ 1
MBD4O95243 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.27■■□□□ 1
MBD4O95243 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.27■■□□□ 1
MBD4O95243 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
MBD4O95243 AL121912.1-201ENST00000603683 238 ntBASIC21.27■■□□□ 1
MBD4O95243 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.27■■□□□ 1
MBD4O95243 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.27■■□□□ 1
MBD4O95243 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.27■■□□□ 1
MBD4O95243 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
MBD4O95243 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.27■□□□□ 0.99
MBD4O95243 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.27■□□□□ 0.99
MBD4O95243 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
MBD4O95243 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 AL390961.4-201ENST00000623958 2535 ntBASIC21.26■□□□□ 0.99
MBD4O95243 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 COX5BP2-201ENST00000392354 334 ntBASIC21.26■□□□□ 0.99
MBD4O95243 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.26■□□□□ 0.99
MBD4O95243 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.26■□□□□ 0.99
MBD4O95243 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 AC116407.2-201ENST00000613639 860 ntBASIC21.26■□□□□ 0.99
MBD4O95243 TP73-AS1-207ENST00000624167 988 ntBASIC21.26■□□□□ 0.99
MBD4O95243 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
MBD4O95243 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.26■□□□□ 0.99
MBD4O95243 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.26■□□□□ 0.99
MBD4O95243 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.26■□□□□ 0.99
MBD4O95243 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
MBD4O95243 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MBD4O95243 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
MBD4O95243 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.25■□□□□ 0.99
MBD4O95243 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.25■□□□□ 0.99
MBD4O95243 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.25■□□□□ 0.99
MBD4O95243 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.25■□□□□ 0.99
MBD4O95243 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.25■□□□□ 0.99
MBD4O95243 AC009078.2-202ENST00000463353 338 ntBASIC21.25■□□□□ 0.99
MBD4O95243 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.25■□□□□ 0.99
MBD4O95243 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.25■□□□□ 0.99
MBD4O95243 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.25■□□□□ 0.99
MBD4O95243 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.25■□□□□ 0.99
MBD4O95243 AC008608.2-201ENST00000606089 416 ntBASIC21.25■□□□□ 0.99
MBD4O95243 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.25■□□□□ 0.99
MBD4O95243 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
MBD4O95243 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
MBD4O95243 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MBD4O95243 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.24■□□□□ 0.99
MBD4O95243 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MBD4O95243 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
MBD4O95243 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.24■□□□□ 0.99
MBD4O95243 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
MBD4O95243 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
MBD4O95243 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.24■□□□□ 0.99
MBD4O95243 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MBD4O95243 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
MBD4O95243 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MBD4O95243 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MBD4O95243 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms