Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.05■□□□□ 0.16
ZIC3O60481 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.05■□□□□ 0.16
ZIC3O60481 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ZIC3O60481 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 DDX43P3-201ENST00000441064 443 ntBASIC16.05■□□□□ 0.16
ZIC3O60481 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 AC122714.2-201ENST00000502787 707 ntBASIC16.05■□□□□ 0.16
ZIC3O60481 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.05■□□□□ 0.16
ZIC3O60481 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.05■□□□□ 0.16
ZIC3O60481 AL691432.3-201ENST00000621860 400 ntBASIC16.05■□□□□ 0.16
ZIC3O60481 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.05■□□□□ 0.16
ZIC3O60481 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
ZIC3O60481 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.05■□□□□ 0.16
ZIC3O60481 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ZIC3O60481 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.05■□□□□ 0.16
ZIC3O60481 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.04■□□□□ 0.16
ZIC3O60481 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 SLC25A6P5-201ENST00000435663 894 ntBASIC16.04■□□□□ 0.16
ZIC3O60481 TPM4P1-201ENST00000436100 807 ntBASIC16.04■□□□□ 0.16
ZIC3O60481 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.04■□□□□ 0.16
ZIC3O60481 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 NOC2LP1-202ENST00000452600 2235 ntBASIC16.04■□□□□ 0.16
ZIC3O60481 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.04■□□□□ 0.16
ZIC3O60481 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ZIC3O60481 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.04■□□□□ 0.16
ZIC3O60481 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ZIC3O60481 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.03■□□□□ 0.16
ZIC3O60481 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ZIC3O60481 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ZIC3O60481 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.03■□□□□ 0.16
ZIC3O60481 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 AKR1C7P-201ENST00000305623 895 ntBASIC16.03■□□□□ 0.16
ZIC3O60481 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.03■□□□□ 0.16
ZIC3O60481 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.03■□□□□ 0.16
ZIC3O60481 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.03■□□□□ 0.16
ZIC3O60481 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.03■□□□□ 0.16
ZIC3O60481 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.03■□□□□ 0.16
ZIC3O60481 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 AL121894.2-201ENST00000602977 491 ntBASIC16.03■□□□□ 0.16
ZIC3O60481 REXO1L6P-202ENST00000619970 1078 ntBASIC16.03■□□□□ 0.16
ZIC3O60481 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ZIC3O60481 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ZIC3O60481 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms