Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.03■□□□□ 0.8
ACTN4O43707 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.03■□□□□ 0.8
ACTN4O43707 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.03■□□□□ 0.8
ACTN4O43707 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.03■□□□□ 0.8
ACTN4O43707 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ACTN4O43707 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.03■□□□□ 0.8
ACTN4O43707 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
ACTN4O43707 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ACTN4O43707 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ACTN4O43707 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ACTN4O43707 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ACTN4O43707 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ACTN4O43707 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.02■□□□□ 0.8
ACTN4O43707 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.02■□□□□ 0.8
ACTN4O43707 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.02■□□□□ 0.8
ACTN4O43707 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 AC211429.1-201ENST00000415277 523 ntBASIC20.02■□□□□ 0.8
ACTN4O43707 TSPY5P-201ENST00000426936 936 ntBASIC20.02■□□□□ 0.8
ACTN4O43707 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.02■□□□□ 0.8
ACTN4O43707 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.02■□□□□ 0.8
ACTN4O43707 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.02■□□□□ 0.8
ACTN4O43707 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ACTN4O43707 CROCCP2-202ENST00000412962 2773 ntBASIC20.02■□□□□ 0.8
ACTN4O43707 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ACTN4O43707 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ACTN4O43707 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.02■□□□□ 0.79
ACTN4O43707 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ACTN4O43707 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.02■□□□□ 0.79
ACTN4O43707 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ACTN4O43707 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
ACTN4O43707 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
ACTN4O43707 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 AC112698.1-201ENST00000510299 916 ntBASIC20.01■□□□□ 0.79
ACTN4O43707 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.01■□□□□ 0.79
ACTN4O43707 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.01■□□□□ 0.79
ACTN4O43707 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.01■□□□□ 0.79
ACTN4O43707 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.01■□□□□ 0.79
ACTN4O43707 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 AL023806.1-201ENST00000603994 1649 ntBASIC20.01■□□□□ 0.79
ACTN4O43707 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
ACTN4O43707 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20■□□□□ 0.79
ACTN4O43707 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ACTN4O43707 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 RNF152P1-201ENST00000397754 604 ntBASIC20■□□□□ 0.79
ACTN4O43707 FAM8A6P-201ENST00000407496 1135 ntBASIC20■□□□□ 0.79
ACTN4O43707 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 TSPY12P-201ENST00000421279 868 ntBASIC20■□□□□ 0.79
ACTN4O43707 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20■□□□□ 0.79
ACTN4O43707 SPDYE13P-201ENST00000445314 798 ntBASIC20■□□□□ 0.79
ACTN4O43707 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
ACTN4O43707 VENTXP5-201ENST00000523979 775 ntBASIC20■□□□□ 0.79
ACTN4O43707 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20■□□□□ 0.79
ACTN4O43707 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20■□□□□ 0.79
ACTN4O43707 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20■□□□□ 0.79
ACTN4O43707 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 LINC01451-201ENST00000623792 534 ntBASIC20■□□□□ 0.79
ACTN4O43707 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20■□□□□ 0.79
ACTN4O43707 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ACTN4O43707 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ACTN4O43707 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms