Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
USH1CQ9Y6N9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 AC142086.2-201ENST00000569753 217 ntBASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 SDHAP2-201ENST00000455183 2001 ntBASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
USH1CQ9Y6N9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 AC105020.1-201ENST00000435356 2205 ntBASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
USH1CQ9Y6N9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 AL023284.2-201ENST00000405850 579 ntBASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USH1CQ9Y6N9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 KSR1P1-201ENST00000446298 240 ntBASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 AP002982.1-201ENST00000492365 877 ntBASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms