Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL391807.1-203ENST00000604392 2365 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AC113347.1-201ENST00000413321 391 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 KRT18P65-201ENST00000439811 1286 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AL441883.1-201ENST00000566170 1045 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AC079602.3-201ENST00000623931 403 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AC097493.4-201ENST00000641197 219 ntBASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HIF3AQ9Y2N7 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 AC073912.3-201ENST00000624414 853 ntBASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 AC133561.5-201ENST00000635547 218 ntBASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HIF3AQ9Y2N7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.14■□□□□ 0.18
HIF3AQ9Y2N7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HIF3AQ9Y2N7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HIF3AQ9Y2N7 AL355312.1-201ENST00000407115 2176 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 STARP1-201ENST00000397973 869 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 SPDYE15P-201ENST00000424157 909 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 HLA-F-220ENST00000434407 884 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 AC116407.2-201ENST00000613639 860 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 AC005363.2-201ENST00000618631 242 ntBASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HIF3AQ9Y2N7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms