Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLIP2Q9UDT6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 AC004870.1-201ENST00000315132 882 ntBASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 AC073592.3-201ENST00000625118 1834 ntBASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLIP2Q9UDT6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 MTCL1P1-201ENST00000446207 792 ntBASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 LINC01711-201ENST00000598340 967 ntBASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLIP2Q9UDT6 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 NUS1P2-201ENST00000417358 873 ntBASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.15■□□□□ 0.98
CLIP2Q9UDT6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLIP2Q9UDT6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms