Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TSPY23P-201ENST00000440136 739 ntBASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VCX3AQ9NNX9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VCX3AQ9NNX9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 AL136967.2-201ENST00000623968 743 ntBASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCX3AQ9NNX9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VCX3AQ9NNX9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VCX3AQ9NNX9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 AC067930.6-201ENST00000623257 4947 ntBASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.7■□□□□ 0.26
VCX3AQ9NNX9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms