Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPAP1Q9BWH6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RPAP1Q9BWH6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 AC018712.1-201ENST00000455767 687 ntBASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
RPAP1Q9BWH6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 AL590627.1-203ENST00000421194 1026 ntBASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 PMS2P1-201ENST00000431037 1228 ntBASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 SLC25A6P5-201ENST00000435663 894 ntBASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 AL591684.3-201ENST00000605187 298 ntBASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 GPALPP1-207ENST00000611650 899 ntBASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.64■■□□□ 1.06
RPAP1Q9BWH6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms