Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 RPS2P28-201ENST00000314255 741 ntBASIC19■□□□□ 0.63
PAAF1Q9BRP4 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 POLD2P1-201ENST00000511220 997 ntBASIC19■□□□□ 0.63
PAAF1Q9BRP4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PAAF1Q9BRP4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PAAF1Q9BRP4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 AL049757.1-201ENST00000616842 1596 ntBASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 AP002414.3-201ENST00000589352 1468 ntBASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 AC098831.1-202ENST00000438821 336 ntBASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 AC107918.4-202ENST00000641623 219 ntBASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 HLA-J-201ENST00000462773 1622 ntBASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PAAF1Q9BRP4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC008735.5-201ENST00000623544 497 ntBASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC073592.4-201ENST00000623827 446 ntBASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC073592.5-201ENST00000624854 528 ntBASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PAAF1Q9BRP4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC132938.5-201ENST00000624980 1813 ntBASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 AC148477.5-201ENST00000625164 1645 ntBASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PAAF1Q9BRP4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms