Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 AC025678.2-201ENST00000562061 970 ntBASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 AC004449.1-201ENST00000564240 433 ntBASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.13■□□□□ 0.01
CSMD1Q96PZ7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 Z98044.1-201ENST00000632503 1764 ntBASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CSMD1Q96PZ7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 FZD10-202ENST00000539839 3282 ntBASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CSMD1Q96PZ7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 ADH5P3-201ENST00000433842 1137 ntBASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 CR383656.12-201ENST00000549567 513 ntBASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CSMD1Q96PZ7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms