Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 AC073314.1-201ENST00000568729 2216 ntBASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 TIMM8BP1-201ENST00000452384 211 ntBASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 SLC25A39P2-201ENST00000537614 270 ntBASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMC1BQ8NDV3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SMC1BQ8NDV3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.08■□□□□ 0.96
SMC1BQ8NDV3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SMC1BQ8NDV3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC1BQ8NDV3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 COX5BP8-201ENST00000416911 349 ntBASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 AC107890.1-201ENST00000422478 521 ntBASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 AL512356.2-201ENST00000546955 174 ntBASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC1BQ8NDV3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 SDHAP2-201ENST00000455183 2001 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 AC005237.2-201ENST00000434368 219 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 AC112191.1-201ENST00000523689 701 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 OR7E47P-204ENST00000575924 449 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 GGTLC5P-201ENST00000617623 998 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 FP475955.4-201ENST00000623131 1990 ntBASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SMC1BQ8NDV3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms