Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 AC116407.3-201ENST00000623905 1129 ntBASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDDC3Q8N4P3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
HDDC3Q8N4P3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
HDDC3Q8N4P3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.89■□□□□ 0.46
HDDC3Q8N4P3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
HDDC3Q8N4P3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HDDC3Q8N4P3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 AC027601.4-201ENST00000611259 610 ntBASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDDC3Q8N4P3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 DUTP2-201ENST00000519164 463 ntBASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 KRT8P47-201ENST00000604727 1398 ntBASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
HDDC3Q8N4P3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDDC3Q8N4P3 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms