Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 ATP5G2P1-201ENST00000433580 426 ntBASIC17.47■□□□□ 0.39
VRK3Q8IV63 TOB2P1-201ENST00000469761 992 ntBASIC17.47■□□□□ 0.39
VRK3Q8IV63 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 AC011840.4-201ENST00000578471 627 ntBASIC17.47■□□□□ 0.39
VRK3Q8IV63 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.47■□□□□ 0.39
VRK3Q8IV63 PCDHB18P-201ENST00000524813 2368 ntBASIC17.46■□□□□ 0.39
VRK3Q8IV63 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 AC233702.3-201ENST00000578656 1387 ntBASIC17.46■□□□□ 0.39
VRK3Q8IV63 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VRK3Q8IV63 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VRK3Q8IV63 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
VRK3Q8IV63 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
VRK3Q8IV63 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
VRK3Q8IV63 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 LINC00265-3P-201ENST00000447588 903 ntBASIC17.45■□□□□ 0.38
VRK3Q8IV63 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VRK3Q8IV63 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.45■□□□□ 0.38
VRK3Q8IV63 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.44■□□□□ 0.38
VRK3Q8IV63 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 GNAS-203ENST00000306120 1878 ntBASIC17.44■□□□□ 0.38
VRK3Q8IV63 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.44■□□□□ 0.38
VRK3Q8IV63 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VRK3Q8IV63 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms