Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC010525.1-201ENST00000585559 441 ntBASIC11.15□□□□□ -0.62
LINC00643Q86TS7 SMUG1P1-201ENST00000590640 811 ntBASIC11.15□□□□□ -0.62
LINC00643Q86TS7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
LINC00643Q86TS7 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
LINC00643Q86TS7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 TNRC18P2-201ENST00000417666 2714 ntBASIC11.14□□□□□ -0.63
LINC00643Q86TS7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC11.14□□□□□ -0.63
LINC00643Q86TS7 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 ACE-204ENST00000428043 5120 ntTSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
LINC00643Q86TS7 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms