Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCNA1P78396 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCNA1P78396 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCNA1P78396 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCNA1P78396 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCNA1P78396 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.25■□□□□ 0.83
CCNA1P78396 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.25■□□□□ 0.83
CCNA1P78396 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.25■□□□□ 0.83
CCNA1P78396 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.25■□□□□ 0.83
CCNA1P78396 KRT18P2-201ENST00000447938 1258 ntBASIC20.25■□□□□ 0.83
CCNA1P78396 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.25■□□□□ 0.83
CCNA1P78396 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.25■□□□□ 0.83
CCNA1P78396 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
CCNA1P78396 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCNA1P78396 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCNA1P78396 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 AC126763.1-201ENST00000552015 2118 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 SIRPAP1-201ENST00000448467 1770 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCNA1P78396 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.24■□□□□ 0.83
CCNA1P78396 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCNA1P78396 KLF4P1-201ENST00000412782 1185 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 ELK2BP-201ENST00000415014 1224 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 SIGLEC30P-201ENST00000455569 941 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.24■□□□□ 0.83
CCNA1P78396 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.24■□□□□ 0.83
CCNA1P78396 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.24■□□□□ 0.83
CCNA1P78396 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.24■□□□□ 0.83
CCNA1P78396 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 MIR4751-201ENST00000578027 74 ntBASIC20.24■□□□□ 0.83
CCNA1P78396 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.24■□□□□ 0.83
CCNA1P78396 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCNA1P78396 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.23■□□□□ 0.83
CCNA1P78396 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 AC003669.1-201ENST00000334569 611 ntBASIC20.23■□□□□ 0.83
CCNA1P78396 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.23■□□□□ 0.83
CCNA1P78396 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CCNA1P78396 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCNA1P78396 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CCNA1P78396 VN2R19P-201ENST00000442399 1052 ntBASIC20.23■□□□□ 0.83
CCNA1P78396 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.23■□□□□ 0.83
CCNA1P78396 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.23■□□□□ 0.83
CCNA1P78396 AC006504.4-201ENST00000592118 1568 ntBASIC20.23■□□□□ 0.83
CCNA1P78396 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCNA1P78396 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CCNA1P78396 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 AL031598.1-201ENST00000561511 1773 ntBASIC20.23■□□□□ 0.83
CCNA1P78396 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCNA1P78396 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCNA1P78396 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
CCNA1P78396 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCNA1P78396 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCNA1P78396 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.22■□□□□ 0.83
CCNA1P78396 BCL2-203ENST00000589955 5011 ntBASIC20.22■□□□□ 0.83
CCNA1P78396 AL049757.1-201ENST00000616842 1596 ntBASIC20.22■□□□□ 0.83
CCNA1P78396 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms