Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC010240.3-201ENST00000607688 395 ntBASIC18■□□□□ 0.47
CCNFP41002 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCNFP41002 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCNFP41002 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CCNFP41002 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCNFP41002 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.99■□□□□ 0.47
CCNFP41002 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CCNFP41002 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
CCNFP41002 AC100803.2-201ENST00000562459 1963 ntBASIC17.99■□□□□ 0.47
CCNFP41002 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.99■□□□□ 0.47
CCNFP41002 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCNFP41002 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCNFP41002 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNFP41002 AC022211.2-201ENST00000585075 2527 ntBASIC17.99■□□□□ 0.47
CCNFP41002 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCNFP41002 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNFP41002 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.98■□□□□ 0.47
CCNFP41002 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.98■□□□□ 0.47
CCNFP41002 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.98■□□□□ 0.47
CCNFP41002 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 AC139887.4-201ENST00000607877 719 ntBASIC17.98■□□□□ 0.47
CCNFP41002 AL023973.1-201ENST00000624619 620 ntBASIC17.98■□□□□ 0.47
CCNFP41002 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNFP41002 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNFP41002 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.98■□□□□ 0.47
CCNFP41002 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCNFP41002 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNFP41002 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNFP41002 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.97■□□□□ 0.47
CCNFP41002 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CCNFP41002 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 RCN1P1-201ENST00000400413 996 ntBASIC17.97■□□□□ 0.47
CCNFP41002 YBX1P2-201ENST00000489612 999 ntBASIC17.97■□□□□ 0.47
CCNFP41002 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.97■□□□□ 0.47
CCNFP41002 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 GCSHP2-201ENST00000560971 527 ntBASIC17.97■□□□□ 0.47
CCNFP41002 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.97■□□□□ 0.47
CCNFP41002 MIR3917-201ENST00000580971 93 ntBASIC17.97■□□□□ 0.47
CCNFP41002 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.97■□□□□ 0.47
CCNFP41002 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNFP41002 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms