Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 POM121L3P-201ENST00000419331 1163 ntBASIC16.36■□□□□ 0.21
RFC3P40938 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.36■□□□□ 0.21
RFC3P40938 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 AC132008.2-207ENST00000454517 770 ntBASIC16.36■□□□□ 0.21
RFC3P40938 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.36■□□□□ 0.21
RFC3P40938 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.36■□□□□ 0.21
RFC3P40938 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 WIZP1-201ENST00000531444 2299 ntBASIC16.36■□□□□ 0.21
RFC3P40938 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.36■□□□□ 0.21
RFC3P40938 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 AC132938.6-201ENST00000623828 1655 ntBASIC16.36■□□□□ 0.21
RFC3P40938 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.36■□□□□ 0.21
RFC3P40938 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFC3P40938 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
RFC3P40938 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.35■□□□□ 0.21
RFC3P40938 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 AP000347.1-202ENST00000435868 847 ntBASIC16.35■□□□□ 0.21
RFC3P40938 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.35■□□□□ 0.21
RFC3P40938 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.35■□□□□ 0.21
RFC3P40938 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 TP73-AS1-207ENST00000624167 988 ntBASIC16.35■□□□□ 0.21
RFC3P40938 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
RFC3P40938 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.35■□□□□ 0.21
RFC3P40938 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RFC3P40938 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RFC3P40938 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.34■□□□□ 0.21
RFC3P40938 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
RFC3P40938 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.34■□□□□ 0.21
RFC3P40938 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 KRT18P65-201ENST00000439811 1286 ntBASIC16.34■□□□□ 0.21
RFC3P40938 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.34■□□□□ 0.21
RFC3P40938 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.34■□□□□ 0.21
RFC3P40938 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.34■□□□□ 0.21
RFC3P40938 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.34■□□□□ 0.21
RFC3P40938 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.34■□□□□ 0.21
RFC3P40938 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.34■□□□□ 0.21
RFC3P40938 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.34■□□□□ 0.21
RFC3P40938 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.34■□□□□ 0.21
RFC3P40938 SLC25A6P4-201ENST00000586535 553 ntBASIC16.34■□□□□ 0.21
RFC3P40938 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
RFC3P40938 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RFC3P40938 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.34■□□□□ 0.21
RFC3P40938 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RFC3P40938 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFC3P40938 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFC3P40938 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFC3P40938 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RFC3P40938 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.33■□□□□ 0.2
RFC3P40938 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.33■□□□□ 0.2
RFC3P40938 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.33■□□□□ 0.2
RFC3P40938 AC112698.1-201ENST00000510299 916 ntBASIC16.33■□□□□ 0.2
RFC3P40938 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFC3P40938 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.33■□□□□ 0.2
RFC3P40938 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.33■□□□□ 0.2
RFC3P40938 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RFC3P40938 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms