Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC22.34■■□□□ 1.17
RFC4P35249 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.34■■□□□ 1.17
RFC4P35249 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.34■■□□□ 1.17
RFC4P35249 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC22.34■■□□□ 1.17
RFC4P35249 AC010507.1-201ENST00000633895 436 ntBASIC22.34■■□□□ 1.17
RFC4P35249 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC22.34■■□□□ 1.17
RFC4P35249 GID4-202ENST00000376345 1391 ntTSL 3 BASIC22.34■■□□□ 1.17
RFC4P35249 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RFC4P35249 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 AC073130.3-201ENST00000624389 2278 ntBASIC22.33■■□□□ 1.17
RFC4P35249 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC22.33■■□□□ 1.17
RFC4P35249 TSEN15P1-201ENST00000423257 515 ntBASIC22.33■■□□□ 1.17
RFC4P35249 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC22.33■■□□□ 1.17
RFC4P35249 KRT19P2-202ENST00000557173 1012 ntBASIC22.33■■□□□ 1.17
RFC4P35249 AC096734.2-201ENST00000562054 433 ntBASIC22.33■■□□□ 1.17
RFC4P35249 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC22.33■■□□□ 1.17
RFC4P35249 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
RFC4P35249 AQP6-205ENST00000618286 829 ntTSL 5 BASIC22.33■■□□□ 1.17
RFC4P35249 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.33■■□□□ 1.17
RFC4P35249 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RFC4P35249 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.33■■□□□ 1.16
RFC4P35249 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
RFC4P35249 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.32■■□□□ 1.16
RFC4P35249 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
RFC4P35249 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 AL035633.1-201ENST00000406139 838 ntBASIC22.32■■□□□ 1.16
RFC4P35249 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC22.32■■□□□ 1.16
RFC4P35249 AP000344.2-201ENST00000512987 629 ntBASIC22.32■■□□□ 1.16
RFC4P35249 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
RFC4P35249 CIPC-205ENST00000555437 566 ntTSL 3 BASIC22.32■■□□□ 1.16
RFC4P35249 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 SPCS2P1-201ENST00000561636 679 ntBASIC22.32■■□□□ 1.16
RFC4P35249 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC22.32■■□□□ 1.16
RFC4P35249 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC22.32■■□□□ 1.16
RFC4P35249 AL805961.1-202ENST00000641562 540 ntBASIC22.32■■□□□ 1.16
RFC4P35249 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RFC4P35249 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC22.31■■□□□ 1.16
RFC4P35249 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RFC4P35249 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 AC003669.1-201ENST00000334569 611 ntBASIC22.31■■□□□ 1.16
RFC4P35249 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
RFC4P35249 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC22.31■■□□□ 1.16
RFC4P35249 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 FAM58CP-201ENST00000435741 640 ntBASIC22.31■■□□□ 1.16
RFC4P35249 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 ACTG1P14-201ENST00000446382 1122 ntBASIC22.31■■□□□ 1.16
RFC4P35249 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
RFC4P35249 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC22.31■■□□□ 1.16
RFC4P35249 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.31■■□□□ 1.16
RFC4P35249 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RFC4P35249 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.31■■□□□ 1.16
RFC4P35249 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
RFC4P35249 AC093010.1-201ENST00000473625 1624 ntBASIC22.31■■□□□ 1.16
RFC4P35249 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms