Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 AC132938.6-201ENST00000623828 1655 ntBASIC13.83□□□□□ -0.2
HOXD3P31249 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
HOXD3P31249 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD3P31249 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD3P31249 SAPCD2P3-201ENST00000455031 850 ntBASIC13.83□□□□□ -0.2
HOXD3P31249 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 AC106795.1-205ENST00000512851 1056 ntBASIC13.83□□□□□ -0.2
HOXD3P31249 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HOXD3P31249 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXD3P31249 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HOXD3P31249 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD3P31249 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXD3P31249 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXD3P31249 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD3P31249 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXD3P31249 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
HOXD3P31249 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXD3P31249 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 AL590627.1-203ENST00000421194 1026 ntBASIC13.82□□□□□ -0.2
HOXD3P31249 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
HOXD3P31249 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXD3P31249 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
HOXD3P31249 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.82□□□□□ -0.2
HOXD3P31249 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 OR6D1P-202ENST00000641007 5290 ntBASIC13.82□□□□□ -0.2
HOXD3P31249 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 HLA-A-201ENST00000376802 1334 ntBASIC13.82□□□□□ -0.2
HOXD3P31249 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.82□□□□□ -0.2
HOXD3P31249 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD3P31249 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD3P31249 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD3P31249 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HOXD3P31249 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 EFTUD1P1-204ENST00000560401 1798 ntBASIC13.81□□□□□ -0.2
HOXD3P31249 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 MTCL1P1-201ENST00000446207 792 ntBASIC13.81□□□□□ -0.2
HOXD3P31249 AC068472.1-201ENST00000474589 881 ntBASIC13.81□□□□□ -0.2
HOXD3P31249 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC13.81□□□□□ -0.2
HOXD3P31249 AF238378.1-201ENST00000526806 358 ntBASIC13.81□□□□□ -0.2
HOXD3P31249 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
HOXD3P31249 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD3P31249 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms