Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 BX276092.7-203ENST00000637198 1536 ntBASIC17.87■□□□□ 0.45
COL4A2P08572 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.87■□□□□ 0.45
COL4A2P08572 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL4A2P08572 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A2P08572 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A2P08572 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A2P08572 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A2P08572 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 CEND1P1-201ENST00000451006 455 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 SIGLEC30P-201ENST00000455569 941 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.86■□□□□ 0.45
COL4A2P08572 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A2P08572 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 AC092902.6-201ENST00000641783 218 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 AL096828.2-201ENST00000567259 1965 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A2P08572 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A2P08572 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A2P08572 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A2P08572 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.86■□□□□ 0.45
COL4A2P08572 AC093028.1-201ENST00000622998 982 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A2P08572 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A2P08572 BX323043.1-201ENST00000641006 1765 ntBASIC17.86■□□□□ 0.45
COL4A2P08572 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A2P08572 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A2P08572 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A2P08572 AL035633.1-201ENST00000406139 838 ntBASIC17.85■□□□□ 0.45
COL4A2P08572 FAM58CP-201ENST00000435741 640 ntBASIC17.85■□□□□ 0.45
COL4A2P08572 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A2P08572 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
COL4A2P08572 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 AC009949.1-201ENST00000623048 1830 ntBASIC17.85■□□□□ 0.45
COL4A2P08572 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
COL4A2P08572 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A2P08572 AL590787.1-201ENST00000568856 1315 ntBASIC17.85■□□□□ 0.45
COL4A2P08572 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL4A2P08572 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A2P08572 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A2P08572 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
COL4A2P08572 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
COL4A2P08572 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A2P08572 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A2P08572 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms