Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
COL2A1P02458 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.74■□□□□ 0.91
COL2A1P02458 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
COL2A1P02458 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
COL2A1P02458 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.74■□□□□ 0.91
COL2A1P02458 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.74■□□□□ 0.91
COL2A1P02458 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
COL2A1P02458 AL353135.1-201ENST00000606729 504 ntBASIC20.74■□□□□ 0.91
COL2A1P02458 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.74■□□□□ 0.91
COL2A1P02458 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL2A1P02458 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL2A1P02458 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.73■□□□□ 0.91
COL2A1P02458 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.73■□□□□ 0.91
COL2A1P02458 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 PRSS29P-201ENST00000440800 595 ntBASIC20.73■□□□□ 0.91
COL2A1P02458 HCG4B-203ENST00000450128 991 ntBASIC20.73■□□□□ 0.91
COL2A1P02458 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.73■□□□□ 0.91
COL2A1P02458 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.73■□□□□ 0.91
COL2A1P02458 AC010654.1-201ENST00000615722 808 ntBASIC20.73■□□□□ 0.91
COL2A1P02458 AC055717.3-201ENST00000622967 595 ntBASIC20.73■□□□□ 0.91
COL2A1P02458 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL2A1P02458 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.73■□□□□ 0.91
COL2A1P02458 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
COL2A1P02458 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL2A1P02458 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.72■□□□□ 0.91
COL2A1P02458 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
COL2A1P02458 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 MCCD1P2-201ENST00000423228 335 ntBASIC20.72■□□□□ 0.91
COL2A1P02458 ACTG1P4-201ENST00000425123 1122 ntBASIC20.72■□□□□ 0.91
COL2A1P02458 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
COL2A1P02458 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
COL2A1P02458 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.72■□□□□ 0.91
COL2A1P02458 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.72■□□□□ 0.91
COL2A1P02458 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.72■□□□□ 0.91
COL2A1P02458 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
COL2A1P02458 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL2A1P02458 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL2A1P02458 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL2A1P02458 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.71■□□□□ 0.91
COL2A1P02458 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 LINC02084-201ENST00000606069 1096 ntBASIC20.71■□□□□ 0.91
COL2A1P02458 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL2A1P02458 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL2A1P02458 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.71■□□□□ 0.91
COL2A1P02458 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL2A1P02458 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.71■□□□□ 0.91
COL2A1P02458 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.71■□□□□ 0.91
COL2A1P02458 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms