Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.43■□□□□ 0.38
TNFP01375 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.43■□□□□ 0.38
TNFP01375 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 SART3-203ENST00000546611 1184 ntBASIC17.43■□□□□ 0.38
TNFP01375 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 AL139288.1-201ENST00000623748 933 ntBASIC17.43■□□□□ 0.38
TNFP01375 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TNFP01375 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
TNFP01375 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TNFP01375 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.43■□□□□ 0.38
TNFP01375 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TNFP01375 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.42■□□□□ 0.38
TNFP01375 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.42■□□□□ 0.38
TNFP01375 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
TNFP01375 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TNFP01375 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.42■□□□□ 0.38
TNFP01375 NKAPP1-205ENST00000585790 367 ntBASIC17.42■□□□□ 0.38
TNFP01375 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
TNFP01375 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 IL9RP2-201ENST00000423948 1312 ntBASIC17.42■□□□□ 0.38
TNFP01375 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.42■□□□□ 0.38
TNFP01375 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TNFP01375 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
TNFP01375 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 HNRNPDP1-201ENST00000439535 754 ntBASIC17.41■□□□□ 0.38
TNFP01375 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.41■□□□□ 0.38
TNFP01375 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.41■□□□□ 0.38
TNFP01375 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 FAM215A-202ENST00000632077 792 ntBASIC17.41■□□□□ 0.38
TNFP01375 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.41■□□□□ 0.38
TNFP01375 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 HTR7P1-202ENST00000624664 4411 ntBASIC17.41■□□□□ 0.38
TNFP01375 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TNFP01375 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.41■□□□□ 0.38
TNFP01375 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TNFP01375 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TNFP01375 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.4■□□□□ 0.38
TNFP01375 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.4■□□□□ 0.38
TNFP01375 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.4■□□□□ 0.38
TNFP01375 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.4■□□□□ 0.38
TNFP01375 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TNFP01375 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms