Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 RNF152P1-201ENST00000397754 604 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 TSPY5P-201ENST00000426936 936 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.31■□□□□ 0.36
CLDN9O95484 HOMER2P1-201ENST00000455653 964 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 AC092597.1-201ENST00000487352 616 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 AC004263.2-201ENST00000617183 678 ntBASIC17.31■□□□□ 0.36
CLDN9O95484 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLDN9O95484 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
CLDN9O95484 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLDN9O95484 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLDN9O95484 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 LTB4R2-202ENST00000528054 3092 ntBASIC17.3■□□□□ 0.36
CLDN9O95484 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CLDN9O95484 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CLDN9O95484 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.3■□□□□ 0.36
CLDN9O95484 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.3■□□□□ 0.36
CLDN9O95484 KRT18P57-201ENST00000443599 1254 ntBASIC17.3■□□□□ 0.36
CLDN9O95484 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.3■□□□□ 0.36
CLDN9O95484 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 LINC01023-201ENST00000606054 436 ntBASIC17.3■□□□□ 0.36
CLDN9O95484 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
CLDN9O95484 AC009154.2-201ENST00000621177 724 ntBASIC17.3■□□□□ 0.36
CLDN9O95484 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CLDN9O95484 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.3■□□□□ 0.36
CLDN9O95484 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
CLDN9O95484 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.3■□□□□ 0.36
CLDN9O95484 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN9O95484 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN9O95484 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.29■□□□□ 0.36
CLDN9O95484 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLDN9O95484 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLDN9O95484 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 ZNF444P1-201ENST00000559497 298 ntBASIC17.29■□□□□ 0.36
CLDN9O95484 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.29■□□□□ 0.36
CLDN9O95484 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLDN9O95484 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN9O95484 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLDN9O95484 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms