Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC005332.1-201ENST00000577698 1310 ntBASIC20.69■□□□□ 0.9
CTDNEP1O95476 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.69■□□□□ 0.9
CTDNEP1O95476 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 AC010460.3-201ENST00000511359 1579 ntBASIC20.68■□□□□ 0.9
CTDNEP1O95476 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CTDNEP1O95476 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.68■□□□□ 0.9
CTDNEP1O95476 AL138688.1-201ENST00000624851 1594 ntBASIC20.68■□□□□ 0.9
CTDNEP1O95476 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 LINC01451-201ENST00000623792 534 ntBASIC20.67■□□□□ 0.9
CTDNEP1O95476 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 CROCCP2-202ENST00000412962 2773 ntBASIC20.67■□□□□ 0.9
CTDNEP1O95476 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.67■□□□□ 0.9
CTDNEP1O95476 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CTDNEP1O95476 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 AC080080.1-201ENST00000625121 2420 ntBASIC20.66■□□□□ 0.9
CTDNEP1O95476 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 AL121956.5-201ENST00000625261 221 ntBASIC20.66■□□□□ 0.9
CTDNEP1O95476 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CTDNEP1O95476 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CTDNEP1O95476 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.65■□□□□ 0.9
CTDNEP1O95476 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CTDNEP1O95476 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms