Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.74■□□□□ 0.11
LMX1BO60663 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.74■□□□□ 0.11
LMX1BO60663 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.74■□□□□ 0.11
LMX1BO60663 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1BO60663 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.74■□□□□ 0.11
LMX1BO60663 AC104390.1-201ENST00000555663 520 ntBASIC15.74■□□□□ 0.11
LMX1BO60663 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.74■□□□□ 0.11
LMX1BO60663 NEK4P2-201ENST00000580004 1012 ntBASIC15.74■□□□□ 0.11
LMX1BO60663 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
LMX1BO60663 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1BO60663 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LMX1BO60663 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
LMX1BO60663 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.74■□□□□ 0.11
LMX1BO60663 AC141586.5-201ENST00000624546 2050 ntBASIC15.74■□□□□ 0.11
LMX1BO60663 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
LMX1BO60663 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 KRT18P55-202ENST00000578578 1546 ntBASIC15.73■□□□□ 0.11
LMX1BO60663 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 AC108860.2-201ENST00000562760 2183 ntBASIC15.73■□□□□ 0.11
LMX1BO60663 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.73■□□□□ 0.11
LMX1BO60663 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
LMX1BO60663 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 STARP1-201ENST00000397973 869 ntBASIC15.73■□□□□ 0.11
LMX1BO60663 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.73■□□□□ 0.11
LMX1BO60663 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.73■□□□□ 0.11
LMX1BO60663 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
LMX1BO60663 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 KRT8P7-201ENST00000533003 1432 ntBASIC15.73■□□□□ 0.11
LMX1BO60663 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LMX1BO60663 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 AC100803.2-201ENST00000562459 1963 ntBASIC15.73■□□□□ 0.11
LMX1BO60663 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
LMX1BO60663 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.73■□□□□ 0.11
LMX1BO60663 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.72■□□□□ 0.11
LMX1BO60663 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 LINC01311-201ENST00000565162 1445 ntBASIC15.72■□□□□ 0.11
LMX1BO60663 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LMX1BO60663 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms