Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AL139400.1-201ENST00000366220 510 ntBASIC30.74■■■□□ 2.51
CCDC88BA6NC98 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AC096734.2-201ENST00000562054 433 ntBASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AP002472.1-201ENST00000577490 586 ntBASIC30.74■■■□□ 2.51
CCDC88BA6NC98 MIR3197-201ENST00000582241 73 ntBASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC88BA6NC98 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC88BA6NC98 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 AC093677.2-201ENST00000600169 1863 ntBASIC30.72■■■□□ 2.51
CCDC88BA6NC98 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 AL645939.2-201ENST00000427340 991 ntBASIC30.72■■■□□ 2.51
CCDC88BA6NC98 CEND1P1-201ENST00000451006 455 ntBASIC30.72■■■□□ 2.51
CCDC88BA6NC98 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 CITED2-204ENST00000618718 901 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 AC009949.1-201ENST00000623048 1830 ntBASIC30.72■■■□□ 2.51
CCDC88BA6NC98 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC30.72■■■□□ 2.51
CCDC88BA6NC98 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC30.71■■■□□ 2.51
CCDC88BA6NC98 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 PNMT-202ENST00000394246 821 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 ADH5P3-201ENST00000433842 1137 ntBASIC30.7■■■□□ 2.51
CCDC88BA6NC98 DDX43P3-201ENST00000441064 443 ntBASIC30.7■■■□□ 2.51
CCDC88BA6NC98 AP000344.2-201ENST00000512987 629 ntBASIC30.7■■■□□ 2.51
CCDC88BA6NC98 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC30.7■■■□□ 2.51
CCDC88BA6NC98 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 STK19B-204ENST00000512515 211 ntBASIC30.7■■■□□ 2.5
CCDC88BA6NC98 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
CCDC88BA6NC98 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 GOLGA6L17P-202ENST00000614358 1398 ntBASIC30.69■■■□□ 2.5
CCDC88BA6NC98 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 METTL23-205ENST00000588302 925 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms