Protein–RNA interactions for Protein: Q9UKN8

GTF3C4, General transcription factor 3C polypeptide 4, humanhuman

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4Q9UKN8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 KRT126P-201ENST00000549467 1181 ntBASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 LINC00602-201ENST00000629776 2065 ntBASIC19.28■□□□□ 0.68
GTF3C4Q9UKN8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
GTF3C4Q9UKN8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
GTF3C4Q9UKN8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
GTF3C4Q9UKN8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 AC233702.3-201ENST00000578656 1387 ntBASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 PRELID1P1-202ENST00000567272 903 ntBASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.25■□□□□ 0.67
GTF3C4Q9UKN8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms