Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.37■□□□□ 0.53
TDP1Q9NUW8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 PRYP5-201ENST00000451909 266 ntBASIC18.36■□□□□ 0.53
TDP1Q9NUW8 RNA5SP415-201ENST00000517246 115 ntBASIC18.36■□□□□ 0.53
TDP1Q9NUW8 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 AC034105.1-201ENST00000563488 319 ntBASIC18.36■□□□□ 0.53
TDP1Q9NUW8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 AC027601.4-201ENST00000611259 610 ntBASIC18.36■□□□□ 0.53
TDP1Q9NUW8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TDP1Q9NUW8 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AC093677.2-201ENST00000600169 1863 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AP002414.3-201ENST00000589352 1468 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 SIGLEC16-201ENST00000599858 1437 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 SPDYE21P-201ENST00000413323 827 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AC092865.5-201ENST00000545435 363 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 Z83851.2-201ENST00000609564 659 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 FAM197Y3-203ENST00000618346 717 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AC139530.3-201ENST00000620344 690 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 AC004817.3-201ENST00000602957 2129 ntBASIC18.35■□□□□ 0.53
TDP1Q9NUW8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
TDP1Q9NUW8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 AC073592.5-201ENST00000624854 528 ntBASIC18.34■□□□□ 0.53
TDP1Q9NUW8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
TDP1Q9NUW8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms