Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 NUS1P1-201ENST00000446295 882 ntBASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 AC074051.2-201ENST00000565115 352 ntBASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM39Q9HCM9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 IGHV3-47-201ENST00000425060 335 ntBASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 AC091607.1-201ENST00000490318 1060 ntBASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 AP005901.3-202ENST00000581653 237 ntBASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 CLEC4GP1-201ENST00000596555 870 ntBASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM39Q9HCM9 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 ABALON-201ENST00000629058 1903 ntBASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRIM39Q9HCM9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms