Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 AC097488.1-201ENST00000507834 756 ntBASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 AC104390.1-201ENST00000555663 520 ntBASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 AC006058.3-201ENST00000606217 1069 ntBASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28BQ9BUN5 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28BQ9BUN5 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AC103702.1-201ENST00000548801 2630 ntBASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 HLA-L-209ENST00000420110 1011 ntBASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 RPPH1-201ENST00000516869 333 ntBASIC17.41■□□□□ 0.38
CCDC28BQ9BUN5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms