Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 GUSBP12-201ENST00000513727 720 ntBASIC17.44■□□□□ 0.38
PKP4Q99569 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.44■□□□□ 0.38
PKP4Q99569 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PKP4Q99569 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.44■□□□□ 0.38
PKP4Q99569 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.44■□□□□ 0.38
PKP4Q99569 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PKP4Q99569 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 KRT8P47-201ENST00000604727 1398 ntBASIC17.43■□□□□ 0.38
PKP4Q99569 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.43■□□□□ 0.38
PKP4Q99569 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PKP4Q99569 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.43■□□□□ 0.38
PKP4Q99569 BX276092.5-203ENST00000456199 560 ntBASIC17.43■□□□□ 0.38
PKP4Q99569 RN7SL606P-201ENST00000472779 293 ntBASIC17.43■□□□□ 0.38
PKP4Q99569 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.43■□□□□ 0.38
PKP4Q99569 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.43■□□□□ 0.38
PKP4Q99569 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 AL121672.3-201ENST00000608644 468 ntBASIC17.43■□□□□ 0.38
PKP4Q99569 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 AP000550.4-202ENST00000639755 178 ntBASIC17.43■□□□□ 0.38
PKP4Q99569 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.43■□□□□ 0.38
PKP4Q99569 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.43■□□□□ 0.38
PKP4Q99569 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.43■□□□□ 0.38
PKP4Q99569 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
PKP4Q99569 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PKP4Q99569 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PKP4Q99569 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PKP4Q99569 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
PKP4Q99569 AC016734.2-201ENST00000624325 1377 ntBASIC17.42■□□□□ 0.38
PKP4Q99569 AC067852.2-201ENST00000590513 2313 ntBASIC17.42■□□□□ 0.38
PKP4Q99569 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.42■□□□□ 0.38
PKP4Q99569 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PKP4Q99569 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.42■□□□□ 0.38
PKP4Q99569 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKP4Q99569 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.42■□□□□ 0.38
PKP4Q99569 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.42■□□□□ 0.38
PKP4Q99569 AL592071.1-201ENST00000611956 408 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms