Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
IFT140Q96RY7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
IFT140Q96RY7 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC29.4■■■□□ 2.3
IFT140Q96RY7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
IFT140Q96RY7 AL008721.1-201ENST00000609964 604 ntBASIC29.4■■■□□ 2.3
IFT140Q96RY7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC29.4■■■□□ 2.3
IFT140Q96RY7 TUBB3P1-201ENST00000405796 1332 ntBASIC29.4■■■□□ 2.3
IFT140Q96RY7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
IFT140Q96RY7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
IFT140Q96RY7 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
IFT140Q96RY7 AC107890.1-201ENST00000422478 521 ntBASIC29.39■■■□□ 2.3
IFT140Q96RY7 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
IFT140Q96RY7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 MIR6752-201ENST00000618442 71 ntBASIC29.39■■■□□ 2.3
IFT140Q96RY7 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC29.39■■■□□ 2.3
IFT140Q96RY7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC29.39■■■□□ 2.29
IFT140Q96RY7 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
IFT140Q96RY7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 CR383656.12-201ENST00000549567 513 ntBASIC29.38■■■□□ 2.29
IFT140Q96RY7 TSFM-210ENST00000550559 897 ntTSL 5 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC29.38■■■□□ 2.29
IFT140Q96RY7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
IFT140Q96RY7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 AC093010.1-201ENST00000473625 1624 ntBASIC29.37■■■□□ 2.29
IFT140Q96RY7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 AC002056.1-201ENST00000395613 760 ntBASIC29.37■■■□□ 2.29
IFT140Q96RY7 LINC00982-205ENST00000420957 435 ntBASIC29.37■■■□□ 2.29
IFT140Q96RY7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 AC125807.1-201ENST00000483097 614 ntBASIC29.37■■■□□ 2.29
IFT140Q96RY7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
IFT140Q96RY7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC29.37■■■□□ 2.29
IFT140Q96RY7 FAM58DP-201ENST00000428076 619 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 FAM185BP-201ENST00000443595 716 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 AC140878.1-201ENST00000565277 250 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 RPL30-202ENST00000396070 440 ntTSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 SPDYE11-202ENST00000450699 704 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 RN7SL589P-201ENST00000481268 310 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 SPDYE9P-201ENST00000570642 692 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
IFT140Q96RY7 AL359881.2-201ENST00000602973 570 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC29.36■■■□□ 2.29
IFT140Q96RY7 SPDYE10P-202ENST00000612005 668 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 SPDYE8P-202ENST00000612377 668 ntBASIC29.36■■■□□ 2.29
IFT140Q96RY7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 FO538757.1-201ENST00000623083 1397 ntBASIC29.35■■■□□ 2.29
IFT140Q96RY7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
IFT140Q96RY7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC29.35■■■□□ 2.29
IFT140Q96RY7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms